Vibe Coding Discoverbiomcp
View on GitHubBioMCP: Biomedical Model Context Protocol
BioMCP is a Rust CLI and MCP server exposing one command grammar over ~30 biomedical sources: PubMed, ClinVar, ClinicalTrials.gov, OncoKB, Reactome and more. Plug it into Claude Code, Codex or any MCP client for evidence-oriented gene, variant, drug, disease and trial queries.
Use Cases
Search PubMed, PubTator3 and Europe PMC literature from an AI agentAnnotate gene variants with ClinVar, gnomAD, OncoKB and CIViCFind and filter ClinicalTrials.gov and NCI trialsCheck drug interactions, labels, approvals and adverse eventsGene-set enrichment via g:Profiler and EnrichrPivot gene to disease, pathway, protein and article evidence mapsLocal cohort, survival and co-occurrence analysis of cBioPortal datasetsPharmacogenomics lookups from CPIC and PharmGKBRegistry-based diagnostic test and regulatory lookupsGive Claude Code, Codex or Claude Desktop reliable biomedical tool access
Built With
- Language
- Rust
- Frameworks
- Model Context Protocol · rmcp · Claude Code plugin · Codex MCP · Docker · maturin · PyO3
Tags
mcp · mcp-server · model-context-protocol · biomedical · bioinformatics · genomics · clinical-trials · pubmed · pubmed-central · rust · cli · llm · evidence · pharmacogenomics · variant-annotation · skills